STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prdm13PR domain containing 13. (636 aa)    
Predicted Functional Partners:
tpd52l1
Tpd52 like 1.
      
 0.718
ptf1a
Pancreas associated transcription factor 1a.
    
 
 0.603
arl15
ADP-ribosylation factor-like 15a.
    
 0.590
dbx2
Homeobox domain-containing protein.
    
 
 0.562
slc38a7
Solute carrier family 38 member 7.
    
 0.553
prdm16
Si:ch211-263k4.2.
     
0.549
ccnc
Cyclin C; Belongs to the cyclin family.
    
 
 0.518
cnot1
CCR4-NOT transcription complex, subunit 1.
      
 0.481
tlx1
T cell leukemia homeobox 1.
    
 
 0.470
tlx3
Homeobox domain-containing protein.
    
 
 0.469
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.