Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101165479Protein phosphatase, Mg2+/Mn2+ dependent, 1H. (514 aa)    
Predicted Functional Partners:
srgap1
SLIT-ROBO Rho GTPase activating protein 1b.
      
 0.619
RAB29
RAB29, member RAS oncogene family.
    
 
 0.582
acbd3
Acyl-Coenzyme A binding domain containing 3.
    
 
 0.526
H2LNT6_ORYLA
Rab interacting lysosomal protein-like 2.
      
 0.498
frmpd3
FERM and PDZ domain containing 3.
      
 0.498
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.466
abl1
Tyrosine-protein kinase.
      
 0.424
LOC101155198
Si:dkey-16l2.16.
    
 
 0.422
rab35
RAB35, member RAS oncogene family b.
    
 
 0.422
osgin2
Oxidative stress induced growth inhibitor family member 2.
      
 0.411
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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