Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cd2bp2CD2 (cytoplasmic tail) binding protein 2. (382 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
    
 0.998
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
 0.997
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.995
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.994
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.992
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 
 0.988
snrpg
Small nuclear ribonucleoprotein G.
    
 0.982
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.980
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.980
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.975
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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