Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101173950Ubiquitin-like protein. (117 aa)    
Predicted Functional Partners:
UBL5
Ubiquitin like 5.
      
 0.604
pin1
Peptidyl-prolyl cis-trans isomerase.
      
 0.602
sumo1
Small ubiquitin-related modifier.
      
 0.498
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.498
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.495
atg3
Autophagy-related protein 3.
      
 0.487
clpp
ATP-dependent Clp protease proteolytic subunit.
      
 0.485
ufm1
Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.
      
 0.484
morn3
Uncharacterized protein.
      
 0.483
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
      
 0.481
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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