Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
usp45Ubiquitin carboxyl-terminal hydrolase. (791 aa)    
Predicted Functional Partners:
usp16
Ubiquitin carboxyl-terminal hydrolase.
  
  
 
0.907
ercc1
Excision repair cross-complementation group 1.
    
 0.827
ubc
Ubiquitin B.
    
 0.804
otud6b
OTU domain containing 6B.
      
 0.714
ice2
Interactor of little elongator complex ELL subunit 2.
      
 0.693
klhl7
Kelch-like family member 7.
      
 0.689
coq3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
      
 0.638
il10
Interleukin 10.
      
 0.604
pibf1
Progesterone immunomodulatory binding factor 1.
      
 0.564
zranb1
Zinc finger, RAN-binding domain containing 1a.
    
 
 0.543
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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