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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp45Ubiquitin carboxyl-terminal hydrolase. (791 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
    
 0.651
rps27a
Ribosomal protein S27a.
    
  0.618
ercc1
Excision repair cross-complementation group 1.
    
 0.572
otud6b
OTU domain containing 6B.
   
  
 0.566
klhl7
Kelch-like family member 7.
      
 0.558
usp39
Ubiquitin specific peptidase 39.
      
 0.487
ubl4a
Ubiquitin like 4A.
    
 0.460
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
   
    0.455
yod1
YOD1 deubiquitinase.
   
  
 0.418
usp47
Ubiquitin specific peptidase 47; Belongs to the peptidase C19 family.
   
  
 0.414
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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