STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174437Muscleblind-like splicing regulator 3. (347 aa)    
Predicted Functional Partners:
pink1
PTEN induced kinase 1.
      
 0.678
LOC101156270
Uncharacterized protein.
      
 0.558
snrpa
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.513
sim2
Uncharacterized protein.
      
 0.507
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
  
 0.493
phf5a
PHD finger protein 5A.
   
  
 0.486
sf3b6
Splicing factor 3b, subunit 6.
   
  
 0.477
smndc1
Survival motor neuron domain containing 1.
      
 0.476
khdrbs2
KH domain containing, RNA binding, signal transduction associated 2.
   
 
 0.473
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
      
 0.467
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.