Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174927Zgc:153018. (246 aa)    
Predicted Functional Partners:
UBR1
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.701
LOC101158810
Peripherin 2-like a.
      
 0.674
LOC105357406
Uncharacterized protein.
      
 0.674
NPAS3
Neuronal PAS domain protein 3.
      
 0.657
kif26a
Kinesin family member 26Ab; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.657
H2MN86_ORYLA
ADP-ribosylation factor 6b.
      
 0.652
CKB
Creatine kinase B; Belongs to the ATP:guanido phosphotransferase family.
      
 0.406
CKMT2
Creatine kinase, mitochondrial 2; Belongs to the ATP:guanido phosphotransferase family.
      
 0.406
LOC101167262
Uncharacterized protein; Belongs to the ATP:guanido phosphotransferase family.
      
 0.406
LOC101169907
Uncharacterized protein; Belongs to the ATP:guanido phosphotransferase family.
      
 0.406
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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