LOC101159285 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101159285

Actin binding LIM protein family member 3. (682 aa)

Predicted Functional Partners:

rab34

0.633

H2L6E1_ORYLA

0.600

LOC101156802

0.568

LOC101166510

0.568

H2MMW3_ORYLA

0.568

dcc

0.560

SAMD8

0.559

LOC101167981

0.559

LOC110016922

0.558

GNG5

0.558

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNG5	H2L6E1_ORYLA	ENSORLP00000041849	ENSORLP00000001388	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.776
GNG5	H2MMW3_ORYLA	ENSORLP00000041849	ENSORLP00000020059	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Gamma-aminobutyric acid (GABA) B receptor, 1a.	0.781
GNG5	LOC101156802	ENSORLP00000041849	ENSORLP00000007338	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Rho guanine nucleotide exchange factor (GEF) 7b.	0.408
GNG5	LOC101159285	ENSORLP00000041849	ENSORLP00000002727	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Actin binding LIM protein family member 3.	0.558
GNG5	LOC101166510	ENSORLP00000041849	ENSORLP00000015216	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Rho guanine nucleotide exchange factor (GEF) 7a.	0.408
GNG5	LOC110016922	ENSORLP00000041849	ENSORLP00000035371	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.901
GNG5	rab34	ENSORLP00000041849	ENSORLP00000005508	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	RAB34, member RAS oncogene family a.	0.602
H2L6E1_ORYLA	GNG5	ENSORLP00000001388	ENSORLP00000041849	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.776
H2L6E1_ORYLA	H2MMW3_ORYLA	ENSORLP00000001388	ENSORLP00000020059	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Gamma-aminobutyric acid (GABA) B receptor, 1a.	0.659
H2L6E1_ORYLA	LOC101156802	ENSORLP00000001388	ENSORLP00000007338	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Rho guanine nucleotide exchange factor (GEF) 7b.	0.652
H2L6E1_ORYLA	LOC101159285	ENSORLP00000001388	ENSORLP00000002727	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Actin binding LIM protein family member 3.	0.600
H2L6E1_ORYLA	LOC101166510	ENSORLP00000001388	ENSORLP00000015216	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Rho guanine nucleotide exchange factor (GEF) 7a.	0.652
H2L6E1_ORYLA	LOC110016922	ENSORLP00000001388	ENSORLP00000035371	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.776
H2L6E1_ORYLA	dcc	ENSORLP00000001388	ENSORLP00000027407	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	DCC netrin 1 receptor.	0.511
H2MMW3_ORYLA	GNG5	ENSORLP00000020059	ENSORLP00000041849	Gamma-aminobutyric acid (GABA) B receptor, 1a.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.781
H2MMW3_ORYLA	H2L6E1_ORYLA	ENSORLP00000020059	ENSORLP00000001388	Gamma-aminobutyric acid (GABA) B receptor, 1a.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.659
H2MMW3_ORYLA	LOC101156802	ENSORLP00000020059	ENSORLP00000007338	Gamma-aminobutyric acid (GABA) B receptor, 1a.	Rho guanine nucleotide exchange factor (GEF) 7b.	0.651
H2MMW3_ORYLA	LOC101159285	ENSORLP00000020059	ENSORLP00000002727	Gamma-aminobutyric acid (GABA) B receptor, 1a.	Actin binding LIM protein family member 3.	0.568
H2MMW3_ORYLA	LOC101166510	ENSORLP00000020059	ENSORLP00000015216	Gamma-aminobutyric acid (GABA) B receptor, 1a.	Rho guanine nucleotide exchange factor (GEF) 7a.	0.651
H2MMW3_ORYLA	LOC110016922	ENSORLP00000020059	ENSORLP00000035371	Gamma-aminobutyric acid (GABA) B receptor, 1a.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.781