STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
napaN-ethylmaleimide-sensitive factor attachment protein, alpha b. (295 aa)    
Predicted Functional Partners:
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 0.977
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.967
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.965
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
    
 0.945
bet1
Bet1 golgi vesicular membrane trafficking protein.
    
 0.942
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
   
 0.942
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.941
LOC105354787
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.934
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
   
 0.931
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.928
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.