STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159596Carnitine O-acetyltransferase b. (617 aa)    
Predicted Functional Partners:
LOC101160707
Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.903
crat
Zgc:154046; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.902
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.758
LOC101172485
Sterol carrier protein 2b.
   
 0.758
RPP14
Ribonuclease P/MRP subunit p14.
   
 0.753
hsd17b4
Hydroxysteroid (17-beta) dehydrogenase 4.
   
 0.725
ech1
Enoyl CoA hydratase 1, peroxisomal; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.708
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.694
LOC101173617
Malate synthase-like.
   
  
 0.687
acox1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.686
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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