STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdlbpHigh density lipoprotein binding protein a. (1283 aa)    
Predicted Functional Partners:
rack1
Receptor for activated C kinase 1.
   
 
 0.728
LOC101168213
BCL2 associated X, apoptosis regulator a.
      
 0.653
LOC101168687
Zgc:153993.
      
 0.636
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
 
 0.606
LOC101167610
Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.
   
  
 0.588
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
   0.581
lrp1b
Low density lipoprotein receptor-related protein 1Bb.
   
  
 0.570
wdr31
WD repeat domain 31.
   
 
 0.537
LOC101161189
Uncharacterized protein.
     
 0.521
LOC101161439
Uncharacterized protein.
     
 0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.