Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hdlbpHigh density lipoprotein binding protein a. (1283 aa)    
Predicted Functional Partners:
rrbp1
Ribosome binding protein 1a.
   
 0.892
rack1
Receptor for activated C kinase 1.
   
 
 0.824
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
   0.780
dnajc2
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
   0.736
LOC101168213
BCL2 associated X, apoptosis regulator a.
      
 0.721
LOC101168687
Zgc:153993.
      
 0.716
nudcd1
NudC domain containing 1.
    
   0.715
cop1
COP1 E3 ubiquitin ligase.
      
 0.707
wdr31
WD repeat domain 31.
   
 
 0.701
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.690
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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