Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161793Cytochrome b561 family, member D2. (224 aa)    
Predicted Functional Partners:
LOC101161311
Protein kinase C binding protein 1, like.
   
 
 0.716
LOC101173063
Cytochrome b561.
      
 0.616
ints3
Integrator complex subunit 3.
   
   0.605
ints1
DUF3677 domain-containing protein.
   
   0.605
ints5
Integrator complex subunit 5.
   
   0.603
nprl2
NPR2 like, GATOR1 complex subunit.
    
 0.510
UBE2O
Ubiquitin conjugating enzyme E2 O.
   
  0.495
znf592
Zinc finger protein 592.
   
 
 0.475
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.419
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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