STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain containing 47. (504 aa)    
Predicted Functional Partners:
tmem147
Transmembrane protein 147.
    
 
 0.930
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.926
ncln
Nicalin.
    
 
 0.922
LOC101155768
Translocating chain-associated membrane protein; Belongs to the TRAM family.
    
 
 0.884
LOC101170423
Zgc:109965.
    
 
 0.842
ENSORLP00000035584
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.829
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
   0.828
tram1
Translocating chain-associated membrane protein; Belongs to the TRAM family.
    
 
 0.826
sec61g
SEC61 translocon gamma subunit.
    
   0.824
RPL7A
Ribosomal protein L7a.
   
   0.812
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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