Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LA90_ORYLASi:ch73-290k24.5. (611 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.821
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.758
fbxo42
F-box protein 42.
      
 0.675
LOC101167335
BAALC binder of MAP3K1 and KLF4 b.
   
  
 0.605
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.578
dcun1d3
DCN1-like protein.
     
  0.575
LOC101161115
TIP120 domain-containing protein.
     
  0.571
cand1
Cullin-associated and neddylation-dissociated 1.
     
  0.571
rps27a
Ribosomal protein S27a.
    
  0.566
fbxo21
F-box protein 21.
     
 0.565
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.