Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tmem42Transmembrane protein 42b. (156 aa)    
Predicted Functional Partners:
tsr2
TSR2 ribosome maturation factor.
      
 0.716
efcab2
Uncharacterized protein.
    
 
 0.695
gpha2
Glycoprotein hormone subunit alpha 2.
     
 0.601
gpnmb
Glycoprotein (transmembrane) nmb.
      
 0.599
LOC101172759
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.595
zdhhc7
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.593
srp14
Signal recognition particle 14.
      
 0.586
LOC100301597
Notochord homeobox.
      
 0.582
LOC101169703
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.576
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.576
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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