Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
snap29Synaptosome associated protein 29. (258 aa)    
Predicted Functional Partners:
LOC105354787
Vesicle-associated membrane protein 8 (endobrevin).
   
 0.999
stx17
Syntaxin 17; Belongs to the syntaxin family.
    
 0.999
vamp4
Vesicle-associated membrane protein 4.
   
 0.998
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
   
 0.998
stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.996
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.996
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.996
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.996
stx8
Syntaxin 8.
    
 0.995
stx18
Syntaxin 18.
    
 0.993
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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