Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ddx43DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family. (650 aa)    
Predicted Functional Partners:
srgap2
SLIT-ROBO Rho GTPase activating protein 2.
   
  
 0.847
LOC101161745
Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.
    
 
 0.800
LOC101171724
Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.
    
 
 0.800
rps11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 0.747
rxylt1
Ribitol xylosyltransferase 1.
   
  
 0.738
LOC101154777
Cyclin-dependent kinase 11B.
     
 0.713
slc17a5
Solute carrier family 17 member 5.
    
 
 0.694
pus7l
Pseudouridine synthase 7 like.
   
 
 0.689
srp72
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 
 0.668
LOC101168249
Uncharacterized protein.
   
 
 0.618
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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