STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx43DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family. (650 aa)    
Predicted Functional Partners:
LOC101161745
Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.
 
  
 
 0.703
LOC101171724
Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.
 
  
 
 0.703
slc17a5
Solute carrier family 17 member 5.
    
 
 0.697
sf3b1
Splicing factor 3b, subunit 1.
   
 0.651
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.622
LOC101167611
Mago homolog, exon junction complex subunit.
   
 0.620
sf3b3
Splicing factor 3b, subunit 3.
   
 0.613
LOC101160447
RAN binding protein 2.
  
 0.608
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.607
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.592
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.