STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spred3Sprouty related EVH1 domain containing 3. (287 aa)    
Predicted Functional Partners:
ENSORLP00000030068
Uncharacterized protein.
 
     0.917
sphkap
SPHK1 interactor, AKAP domain containing.
      
 0.709
slitrk3
SLIT and NTRK-like family, member 3a.
     
 0.703
tsnaxip1
TSNAXIP1_N domain-containing protein.
      
 0.703
LOC101168439
Par-6 family cell polarity regulator alpha.
      
 0.669
LOC101168802
Estrogen-related receptor delta.
      
 0.659
H2MVY4_ORYLA
Capping protein regulator and myosin 1 linker 2.
      
 0.654
SPHK1
Sphingosine kinase 1.
      
 0.615
H2MJT0_ORYLA
Uncharacterized protein.
    
 0.563
Nf1
Uncharacterized protein.
    
 0.563
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.