Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
slc25a1Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (317 aa)    
Predicted Functional Partners:
LOC101173617
Malate synthase-like.
   
  
 0.751
LOC111947876
Si:dkeyp-117b11.1.
      
 0.688
snap29
Synaptosome associated protein 29.
      
 0.649
H2MN31_ORYLA
ATP-binding cassette, sub-family A (ABC1), member 12.
      
 0.554
pgk1
Phosphoglycerate kinase.
      
 0.519
glyr1
Glyoxylate reductase 1 homolog (Arabidopsis).
   
  
 0.511
immt
MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
    
 
 0.507
LOC101157001
Retinal G protein coupled receptor a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
      
 0.507
zdhhc24
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.502
LOC101164413
Vesicle-associated membrane protein 1.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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