STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a1Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (317 aa)    
Predicted Functional Partners:
cs
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.816
LOC111947876
Si:dkeyp-117b11.1.
      
 0.793
LOC101173617
Malate synthase-like.
   
  
 0.742
LOC101163991
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
0.641
LOC101171421
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
 
0.641
glyr1
Glyoxylate reductase 1 homolog (Arabidopsis).
   
  
 0.614
snap29
Synaptosome associated protein 29.
      
 0.611
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
   
   0.611
drg1
Developmentally regulated GTP binding protein 1.
    
   0.591
H2MLD6_ORYLA
Zgc:103697.
    
   0.591
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.