STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barhl2BarH-like homeobox 2. (361 aa)    
Predicted Functional Partners:
LOC101160967
Iroquois homeobox 7.
   
 
 0.648
lhx5
LIM homeobox 5.
   
 
 0.602
C1orf146
Chromosome 1 open reading frame 146.
      
 0.592
LOC101174213
Zinc finger protein 503.
   
  
 0.562
znf503
Zinc finger protein 503.
   
  
 0.553
LOC101158718
BAF chromatin remodeling complex subunit BCL11A.
   
 0.523
foxn4
Forkhead box N4.
   
 0.498
SP3
Sp3a transcription factor.
    
 0.493
bhlhe22
Basic helix-loop-helix family, member e22.
   
  
 0.470
pou4f2
POU domain protein.
  
  
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.