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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx34DEAH (Asp-Glu-Ala-His) box polypeptide 34. (1151 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.936
slu7
SLU7 homolog, splicing factor.
   
 0.923
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.919
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.912
yju2
YJU2 splicing factor homolog.
    
 0.891
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
   
 0.879
utp3
UTP3 small subunit processome component.
   
 0.870
prpf18
PRP18 pre-mRNA processing factor 18 homolog (yeast).
   
 0.866
utp25
UTP25 small subunit processor component.
   
 0.865
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
  
0.856
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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