STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101171177Eomesodermin homolog a. (650 aa)    
Predicted Functional Partners:
ENSORLP00000035859
Homeobox domain-containing protein.
   
 0.796
foxh1
Forkhead box H1.
     
 0.689
egr2
Early growth response 2b.
   
 
 0.672
sox17
SRY-box containing gene 17.
    
 0.671
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 
 0.665
cask
Uncharacterized protein; Belongs to the MAGUK family.
    
 
 0.665
LOC100049520
POU domain protein.
   
 0.633
LOC101157910
Somatostatin.
   
  
 0.619
trps1
Trichorhinophalangeal syndrome I.
    
 0.615
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.603
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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