STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frmpd2FERM and PDZ domain containing 2. (776 aa)    
Predicted Functional Partners:
ENSORLP00000035023
Uncharacterized protein.
 
  
  0.889
gdf10
Growth differentiation factor 10b.
     
 0.832
ubtd1
Ubiquitin domain containing 1b.
      
 0.789
mms19
MMS19 homolog, cytosolic iron-sulfur assembly component.
      
 0.787
LOC101155954
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
    
 0.653
sars1
Seryl-tRNA synthetase.
    
   0.625
LOC101158780
Tyrosine-protein phosphatase non-receptor type.
 
   
  0.613
LOC101161671
Tyrosine-protein phosphatase non-receptor type.
 
   
  0.549
LOC101159414
Uncharacterized protein.
      
 0.535
LOC105354904
FERM and PDZ domain containing 1b.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.