STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pofut1Uncharacterized protein. (395 aa)    
Predicted Functional Partners:
poglut1
Protein O-glucosyltransferase 1.
   
 
 0.712
LOC101162446
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5.
      
 0.620
akap7
Uncharacterized protein.
      
 0.602
ABHD1
Abhydrolase domain containing 1.
      
 0.586
epb41l2
FERM domain-containing protein.
      
 0.578
pcsk2
Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.
   
  
 0.572
COL21A1
Collagen type XXI alpha 1 chain.
      
 0.566
LOC111946868
Zinc finger and BTB domain containing 24.
      
 0.566
zbtb46
Zinc finger and BTB domain containing 46.
      
 0.563
eogt
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase.
      
 0.560
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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