STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LAH9_ORYLAUncharacterized protein. (328 aa)    
Predicted Functional Partners:
actr10
Actin related protein 10; Belongs to the actin family.
    
 
 0.599
wars1
Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.598
tbx15
T-box transcription factor 15.
      
 0.598
cntn2
Contactin 2.
   
 0.565
LOC101159916
Contactin 3a, tandem duplicate 1.
   
 0.551
LOC101160409
Contactin 3a, tandem duplicate 2.
   
 0.551
LOC101166021
Contactin 1b.
   
 0.551
LOC101162284
Contactin 3b.
   
 0.551
LOC101167031
Contactin 4.
   
 0.551
cntn5
Contactin 5.
   
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.