SLC39A3 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SLC39A3

Solute carrier family 39 member 3. (315 aa)

Predicted Functional Partners:

samm50

0.702

LOC101164364

0.702

LOC101163689

0.690

mtx3

0.690

slc39a7

0.559

timm13

0.550

TOMM7

0.517

slc39a13

0.512

tomm22

0.507

LOC101163600

0.496

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163600	SLC39A3	ENSORLP00000014567	ENSORLP00000002892	Uncharacterized protein.	Solute carrier family 39 member 3.	0.496
LOC101163600	slc39a13	ENSORLP00000014567	ENSORLP00000007669	Uncharacterized protein.	Solute carrier family 39 member 13.	0.666
LOC101163600	slc39a7	ENSORLP00000014567	ENSORLP00000007374	Uncharacterized protein.	Solute carrier family 39 member 7.	0.677
LOC101163689	LOC101164364	ENSORLP00000021097	ENSORLP00000014869	Metaxin.	Sorting and assembly machinery component 50 homolog, like.	0.963
LOC101163689	SLC39A3	ENSORLP00000021097	ENSORLP00000002892	Metaxin.	Solute carrier family 39 member 3.	0.690
LOC101163689	TOMM7	ENSORLP00000021097	ENSORLP00000031339	Metaxin.	Translocase of outer mitochondrial membrane 7.	0.815
LOC101163689	mtx3	ENSORLP00000021097	ENSORLP00000041307	Metaxin.	Metaxin.	0.557
LOC101163689	samm50	ENSORLP00000021097	ENSORLP00000001697	Metaxin.	SAMM50 sorting and assembly machinery component.	0.963
LOC101163689	timm13	ENSORLP00000021097	ENSORLP00000033120	Metaxin.	Translocase of inner mitochondrial membrane 13 homolog (yeast); Belongs to the small Tim family.	0.431
LOC101163689	tomm22	ENSORLP00000021097	ENSORLP00000040201	Metaxin.	Translocase of outer mitochondrial membrane 22 homolog (yeast).	0.796
LOC101164364	LOC101163689	ENSORLP00000014869	ENSORLP00000021097	Sorting and assembly machinery component 50 homolog, like.	Metaxin.	0.963
LOC101164364	SLC39A3	ENSORLP00000014869	ENSORLP00000002892	Sorting and assembly machinery component 50 homolog, like.	Solute carrier family 39 member 3.	0.702
LOC101164364	TOMM7	ENSORLP00000014869	ENSORLP00000031339	Sorting and assembly machinery component 50 homolog, like.	Translocase of outer mitochondrial membrane 7.	0.801
LOC101164364	mtx3	ENSORLP00000014869	ENSORLP00000041307	Sorting and assembly machinery component 50 homolog, like.	Metaxin.	0.963
LOC101164364	samm50	ENSORLP00000014869	ENSORLP00000001697	Sorting and assembly machinery component 50 homolog, like.	SAMM50 sorting and assembly machinery component.	0.544
LOC101164364	timm13	ENSORLP00000014869	ENSORLP00000033120	Sorting and assembly machinery component 50 homolog, like.	Translocase of inner mitochondrial membrane 13 homolog (yeast); Belongs to the small Tim family.	0.492
LOC101164364	tomm22	ENSORLP00000014869	ENSORLP00000040201	Sorting and assembly machinery component 50 homolog, like.	Translocase of outer mitochondrial membrane 22 homolog (yeast).	0.885
SLC39A3	LOC101163600	ENSORLP00000002892	ENSORLP00000014567	Solute carrier family 39 member 3.	Uncharacterized protein.	0.496
SLC39A3	LOC101163689	ENSORLP00000002892	ENSORLP00000021097	Solute carrier family 39 member 3.	Metaxin.	0.690
SLC39A3	LOC101164364	ENSORLP00000002892	ENSORLP00000014869	Solute carrier family 39 member 3.	Sorting and assembly machinery component 50 homolog, like.	0.702