Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLC39A3Solute carrier family 39 member 3. (315 aa)    
Predicted Functional Partners:
TOMM7
Translocase of outer mitochondrial membrane 7.
    
 
 0.690
samm50
SAMM50 sorting and assembly machinery component.
    
 
 0.639
LOC101164364
Sorting and assembly machinery component 50 homolog, like.
    
 
 0.639
LOC101163689
Metaxin.
   
 
 0.619
mtx3
Metaxin.
   
 
 0.619
slc39a7
Solute carrier family 39 member 7.
   
 0.611
phb
Prohibitin.
    
 
 0.584
slc30a6
Solute carrier family 30 member 6.
   
 
 0.584
SLC39A12
Solute carrier family 39 member 12.
   
 0.583
slc39a4
ZIP4_domain domain-containing protein.
   
 0.583
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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