STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105358390Uncharacterized protein. (410 aa)    
Predicted Functional Partners:
LOC101172604
Thioesterase superfamily member 4.
     
 0.970
acot7
Acyl-CoA thioesterase 7.
    
 0.951
LOC110014434
Uncharacterized protein.
  
 
 
0.928
LOC105357122
Uncharacterized protein.
  
 
 
0.927
LOC101166497
Uncharacterized protein.
  
  
 
0.900
mblac2
Metallo-beta-lactamase domain containing 2.
   
 
  0.900
acot8
Acyl-CoA thioesterase 8.
     
 0.749
acox1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 
 0.736
acot13
Acyl-CoA thioesterase 13.
    
 0.735
ephx2
AB hydrolase-1 domain-containing protein.
  
 
 0.697
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.