STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp3r1Uncharacterized protein. (170 aa)    
Predicted Functional Partners:
LOC101168142
Serine/threonine-protein phosphatase.
   
 0.994
LOC101161493
Nuclear factor of activated T cells 1.
    
 0.983
nfatc1
RHD domain-containing protein.
    
 0.983
LOC101162612
Serine/threonine-protein phosphatase.
   
 0.982
LOC101172250
Serine/threonine-protein phosphatase.
   
 0.982
LOC101156706
Serine/threonine-protein phosphatase.
   
 0.982
LOC101171005
Nuclear factor of activated T cells 2a.
    
 0.971
nfatc3
Nuclear factor of activated T cells 3a.
    
 0.967
LOC101172896
RHD domain-containing protein.
    
 0.967
calm3
Calmodulin-A; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
   
0.953
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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