Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ppp3r1Uncharacterized protein. (170 aa)    
Predicted Functional Partners:
LOC101168142
Serine/threonine-protein phosphatase.
   
 0.991
LOC101161493
Nuclear factor of activated T cells 1.
    
 0.987
nfatc1
RHD domain-containing protein.
    
 0.987
LOC101162612
Serine/threonine-protein phosphatase.
   
 0.986
LOC101172250
Serine/threonine-protein phosphatase.
   
 0.986
LOC101156706
Serine/threonine-protein phosphatase.
   
 0.986
LOC101169815
Serine/threonine-protein phosphatase.
   
 0.986
LOC101171005
Nuclear factor of activated T cells 2a.
    
 0.982
nfatc3
Nuclear factor of activated T cells 3a.
    
 0.972
LOC101172896
RHD domain-containing protein.
    
 0.972
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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