Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dtwd1DTW domain containing 1. (302 aa)    
Predicted Functional Partners:
dtwd2
DTW domain containing 2.
      
 0.860
tsr3
Probable ribosome biogenesis protein tsr3; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.856
dus2
Dihydrouridine synthase 2.
      
 0.855
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
      
 0.716
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
      
 0.644
ebna1bp2
EBNA1 binding protein 2.
      
 0.624
spcs1
Signal peptidase complex subunit 1.
      
 0.580
ccdc85c
Coiled-coil domain containing 85C.
      
 0.566
ENSORLP00000037368
Uncharacterized protein.
      
 0.566
LOC101175051
Si:ch211-113e8.10.
      
 0.539
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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