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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atg2aAutophagy related 2A. (2023 aa)    
Predicted Functional Partners:
ulk1
Unc-51 like autophagy activating kinase 1.
   
 0.983
wdr45
WD repeat domain 45.
    
 0.981
wdr45b
WD repeat domain 45B.
    
 0.976
LOC101167046
Unc-51 like autophagy activating kinase 1a.
   
 0.975
LOC101160680
Unc-51 like autophagy activating kinase 2.
   
 0.975
WIPI1
Uncharacterized protein.
    
 0.973
wipi2
WD repeat domain, phosphoinositide interacting 2.
    
 0.973
LOC101159269
WD repeat domain, phosphoinositide interacting 1.
    
 0.973
ATG2B
Autophagy related 2B.
  
  
 
0.903
atg9a
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 
 0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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