Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
vstm4V-set and transmembrane domain containing 4b. (370 aa)    
Predicted Functional Partners:
LOC101162873
Leucine rich repeat containing 18b.
      
 0.653
myadml2
Myeloid-associated differentiation marker-like 2.
      
 0.652
ADAP1
ArfGAP with dual PH domains 1.
      
 0.652
rasd1
Uncharacterized protein.
      
 0.652
MYADML2
Myeloid associated differentiation marker like 2.
      
 0.652
LOC101173307
Transmembrane channel-like protein.
      
 0.651
LOC101158978
Mitogen-activated protein kinase.
      
 0.616
abca3
ATP-binding cassette, sub-family A (ABC1), member 3b.
      
 0.524
cant1
Calcium activated nucleotidase 1a.
      
 0.510
notum
Notum, palmitoleoyl-protein carboxylesterase a.
      
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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