Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
stradaSTE20 related adaptor alpha. (482 aa)    
Predicted Functional Partners:
stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
    
 0.988
prkaa2
Non-specific serine/threonine protein kinase.
    
0.956
prkaa1
Non-specific serine/threonine protein kinase.
    
0.956
LOC101156310
Calcium binding protein 39-like.
    
 0.956
LOC101163094
Calcium binding protein 39, like 1.
    
 0.956
LOC101165166
Calcium binding protein 39.
    
 0.956
STRADB
STE20 related adaptor beta.
  
  
 
0.903
sec61g
SEC61 translocon gamma subunit.
   
 
 0.765
sec63
SEC63 homolog, protein translocation regulator.
    
 
 0.752
sec62
SEC62 homolog, preprotein translocation factor.
    
 
 0.736
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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