Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dtd1D-aminoacyl-tRNA deacylase. (207 aa)    
Predicted Functional Partners:
LOC101171716
Serine/threonine-protein phosphatase.
   
   0.676
PPP6C
Serine/threonine-protein phosphatase.
   
   0.676
yars1
Tyrosine--tRNA ligase.
  
 
 0.643
dtd2
D-aminoacyl-tRNA deacylase 2.
      
 0.594
yars2
Tyrosine--tRNA ligase.
     
 0.532
aars2
Alanyl-tRNA synthetase 2, mitochondrial (putative); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
  
  
 0.492
ddx43
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.
    
 
 0.473
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
  
  
 0.466
lars2
Leucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.442
pars2
Prolyl-tRNA synthetase 2, mitochondrial.
   
 
 0.417
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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