STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156166Syndecan binding protein (syntenin) 2. (317 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
    
 0.855
LOC101169622
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 
 0.684
cd63
Tetraspanin.
   
 0.611
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.596
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.596
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
    
 0.589
LOC101160196
Ephrin-B3a; Belongs to the ephrin family.
    
 0.587
efnb1
Ephrin-B1; Belongs to the ephrin family.
    
 0.587
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.583
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.577
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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