Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rin2Si:ch211-85n16.4. (996 aa)    
Predicted Functional Partners:
exo1
Exonuclease 1.
    
   0.800
rab5c
RAB5C, member RAS oncogene family.
    
 0.758
LOC101159835
RAB5A, member RAS oncogene family, a.
    
 0.758
LOC101157247
RAB5A, member RAS oncogene family, b.
    
 0.758
crnkl1
Crooked neck pre-mRNA splicing factor 1.
      
 0.681
LOC101158703
Uncharacterized protein.
    
 0.630
LOC101168567
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.630
LOC101174364
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.630
mcph1
Uncharacterized protein.
     
 0.603
cenpj
Centromere protein J.
    
 
 0.596
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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