STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nxf1Zgc:153681. (665 aa)    
Predicted Functional Partners:
nxt2
Nuclear transport factor 2-like export factor 2.
    
 0.998
ALYREF
Aly/REF export factor.
    
 0.996
rae1
Ribonucleic acid export 1.
    
 0.993
LOC101155211
Serine and arginine rich splicing factor 7a.
   
 0.986
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.985
LOC101171767
Uncharacterized protein.
   
 0.985
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.985
nup214
Nup214_FG domain-containing protein.
   
 0.983
nup58
Nucleoporin 58.
   
 0.981
nup98
Nucleoporin 98.
   
 0.981
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.