STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOMER1Homer scaffold protein 1. (376 aa)    
Predicted Functional Partners:
LOC101161005
WH1 domain-containing protein.
    
0.868
LOC101172375
Uncharacterized protein.
    
 0.774
shank3
SH3 and multiple ankyrin repeat domains 3a.
    
 0.646
LOC101173805
Glutamate receptor, metabotropic 5a.
    
 0.632
grm1
Glutamate receptor, metabotropic 1a.
    
 0.632
grm5
Glutamate receptor, metabotropic 5b.
    
 0.632
adora2b
Adenosine A2b receptor.
      
 0.623
ENSORLP00000035838
FERM_f0 domain-containing protein.
    
 0.528
dyrk1a
Dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A, b.
   
  
 0.512
xaf1
XIAP associated factor 1.
    
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.