Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nsfl1cNSFL1 (p97) cofactor (p47). (373 aa)    
Predicted Functional Partners:
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.998
ubxn6
UBX domain protein 6.
    
 0.996
ubxn2a
UBX domain protein 2A.
  
 
 
0.989
ubxn1
UBX domain protein 1.
   
 0.980
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.973
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.958
ubxn7
UBX domain protein 7.
   
 
 0.958
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.955
vcpip1
Valosin containing protein (p97)/p47 complex interacting protein 1.
   
 
 0.953
spata5l1
Spermatogenesis associated 5-like 1.
   
 0.949
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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