STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161258Carbonic anhydrase IV c; Belongs to the alpha-carbonic anhydrase family. (307 aa)    
Predicted Functional Partners:
LOC101168556
Uncharacterized protein; Belongs to the GST superfamily.
      
 0.653
LOC101168055
Uncharacterized protein; Belongs to the GST superfamily.
      
 0.653
rpf2
Ribosome production factor 2 homolog.
   
 
 0.593
grwd1
Glutamate-rich WD repeat containing 1.
   
  
 0.514
LOC101167553
Glutathione S-transferase rho; Belongs to the GST superfamily.
      
 0.508
LOC101168304
Glutathione S-transferase rho; Belongs to the GST superfamily.
      
 0.508
pkd2l1
EF-hand domain-containing protein.
    
 
 0.484
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
  
 0.471
wdr43
WD repeat domain 43.
   
    0.470
pck2
Phosphoenolpyruvate carboxykinase 2 (mitochondrial).
   
  
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.