Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hnrnprHeterogeneous nuclear ribonucleoprotein R. (622 aa)    
Predicted Functional Partners:
H2N0H8_ORYLA
RRM domain-containing protein.
   
 0.922
LOC101155211
Serine and arginine rich splicing factor 7a.
   
 0.903
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.901
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.901
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.877
LOC101167735
RRM domain-containing protein.
   
 0.872
LOC101163114
RRM domain-containing protein.
   
 0.872
larp7
La ribonucleoprotein domain family, member 7.
   
 0.795
H2M705_ORYLA
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.789
ilf2
Interleukin enhancer binding factor 2.
   
 
 0.784
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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