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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc35c2Solute carrier family 35 member C2. (362 aa)    
Predicted Functional Partners:
H2L989_ORYLA
Uncharacterized protein.
 
   
  0.872
slc35b4
Solute carrier family 35 member B4.
      
 0.636
slc35b2
Solute carrier family 35 member B2.
      
 0.629
slc35c1
Solute carrier family 35 member C1.
   
  
0.571
rtca
RNA 3'-terminal phosphate cyclase.
   
  
 0.569
slc38a6
Solute carrier family 38 member 6.
   
  
 0.568
tmem144
Transmembrane protein 144b.
      
 0.566
slc35e1
Solute carrier family 35 member E1.
      
0.560
slc35e3
Solute carrier family 35 member E3.
      
 0.560
slc35b3
Solute carrier family 35 member B3.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.