Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fermt3Fermitin family member 3b. (645 aa)    
Predicted Functional Partners:
fblim1
Filamin binding LIM protein 1.
    
 0.846
ILK
Integrin linked kinase.
   
 
 0.751
LOC101172012
Uncharacterized protein.
   
 
 0.751
plek
Pleckstrin.
   
  
 0.745
fermt2
Fermitin family member 2.
    
   0.735
fermt1
Fermitin family member 1.
    
   0.735
nckap1
NCK-associated protein 1.
   
 
 0.728
LOC101159814
NCK associated protein 1 like.
   
 
 0.728
itgb8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.722
emc1
ER membrane protein complex subunit 1.
      
 0.719
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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