STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc47Leucine rich repeat containing 47. (540 aa)    
Predicted Functional Partners:
farsa
Phenylalanyl-tRNA synthetase subunit alpha.
  
 0.986
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.971
fars2
Phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.960
alg9
Ferredoxin-fold anticodon binding domain containing 1.
  
 0.960
yars1
Tyrosine--tRNA ligase.
  
  
 0.959
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.905
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
    
 
 0.901
rps11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.890
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.877
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.841
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.