Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc47Leucine rich repeat containing 47. (540 aa)    
Predicted Functional Partners:
farsa
Phenylalanyl-tRNA synthetase subunit alpha.
  
 0.979
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.973
alg9
Ferredoxin-fold anticodon binding domain containing 1.
  
 0.932
fars2
Phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.929
yars1
Tyrosine--tRNA ligase.
  
  
 0.902
iars1
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.902
eif1ad
Eukaryotic translation initiation factor 1A domain containing.
   
 
 0.889
riok1
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
   
 
 0.860
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
  
 
 0.852
rps11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 
 0.821
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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