STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170271Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)    
Predicted Functional Partners:
LOC101164147
Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.
    
 0.965
LOC101157368
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 0.965
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.927
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.859
tradd
Tnfrsf1a-associated via death domain.
    
 
 0.848
ARHGDIA
Rho GDP dissociation inhibitor alpha.
    
 0.792
LOC101161729
Rho GDP dissociation inhibitor (GDI) alpha.
    
 0.792
LOC101166052
Rho GDP dissociation inhibitor (GDI) gamma.
    
 0.792
rtn4r
Reticulon 4 receptor.
    
 0.774
LOC101162455
Leucine rich repeat and Ig domain containing 2a.
    
 0.757
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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