Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dnajc8DnaJ (Hsp40) homolog, subfamily C, member 8. (250 aa)    
Predicted Functional Partners:
ppp1r8
Protein phosphatase 1, regulatory subunit 8b.
   
 
 0.968
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
  0.965
LOC101155132
HIV-1 Tat specific factor 1.
     
 0.962
sf3a2
Splicing factor 3a, subunit 2.
    
 
 0.962
SUGP1
SURP and G-patch domain containing 1.
     
  0.962
srrt
Serrate RNA effector molecule homolog (Arabidopsis).
   
 
  0.954
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
 0.954
TCERG1
Transcription elongation regulator 1.
   
 
  0.954
sf3b2
Splicing factor 3b, subunit 2.
   
   0.907
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
  0.899
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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