STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc40Leucine rich repeat containing 40. (595 aa)    
Predicted Functional Partners:
LOC101158057
Canopy FGF signaling regulator 3.
    
 0.965
mri1
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). Belongs to the eIF-2B alpha/beta/delta subunits family. MtnA subfamily.
    
   0.901
wls
Wnt ligand secretion mediator.
      
 0.829
spef2
Sperm flagellar 2.
    
 0.826
smim12
Small integral membrane protein 12.
   
 
 0.777
tcaim
T cell activation inhibitor, mitochondrial.
   
  
 0.717
kctd3
Potassium channel tetramerization domain containing 3.
    
  0.716
SHKBP1
SH3KBP1 binding protein 1.
    
  0.716
bend7
Si:ch211-220f12.4.
      
 0.711
LOC101175311
Si:ch73-389b16.2.
    
 
 0.709
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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