Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf175Ring finger protein 175. (314 aa)    
Predicted Functional Partners:
rnf185
Ring finger protein 185.
 
    
 0.821
rnf151
Ring finger protein 151.
      
 0.690
cfap161
Cilia and flagella associated protein 161.
      
 0.649
LOC101164752
Ring finger protein 126.
      
 0.639
mospd2
Motile sperm domain containing 2.
      
 0.631
zglp1
GATA-type domain-containing protein.
      
 0.615
rnf122
Ring finger protein 122.
      
 0.597
dis3l2
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.
   
  
 0.585
tmtc3
Transmembrane O-mannosyltransferase targeting cadherins 3.
      
 0.576
RNF5
Ring finger protein 5.
 
    
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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