Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162379CDC-like kinase 2a. (523 aa)    
Predicted Functional Partners:
LOC110017476
Arginine/serine-rich protein 1.
   
 
 0.715
srsf10
Serine and arginine rich splicing factor 10.
   
 
 0.679
ythdc1
YTH domain containing 1.
   
 
 0.650
SNIP1
Smad nuclear interacting protein 1.
    
   0.616
LOC101170959
Apoptotic chromatin condensation inducer 1b.
   
 
 0.596
acin1
SAP domain-containing protein.
   
 
 0.596
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 
 0.570
LOC101171767
Uncharacterized protein.
   
 
 0.570
clasrp
CLK4-associating serine/arginine rich protein.
    
 
 0.544
LOC101162294
Cwf21 domain-containing protein.
    
 
 0.543
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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