STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162314Inhibitor of DNA binding 4. (138 aa)    
Predicted Functional Partners:
myog
Myogenin.
    
 
 0.779
myf6
Myogenic factor 6.
    
 
 0.702
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
      
 0.680
cep76
Centrosomal protein 76.
      
 0.679
LOC101161671
Tyrosine-protein phosphatase non-receptor type.
      
 0.662
H2M505_ORYLA
BHLH domain-containing protein.
    
 0.632
ASCL4
Achaete-scute family bHLH transcription factor 4.
    
 0.632
ENSORLP00000041481
Oligodendrocyte transcription factor 1.
    
 
 0.597
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
      
 0.587
H2LDV5_ORYLA
Uncharacterized protein.
    
 0.582
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.