STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174137C-type lectin domain-containing protein. (176 aa)    
Predicted Functional Partners:
LOC101165525
Serine palmitoyltransferase, long chain base subunit 2b.
      
 0.656
ENSORLP00000035621
C-type lectin domain-containing protein.
  
     0.493
RGS20
RGS domain-containing protein.
      
 0.491
Rhbdd2
Rhomboid domain-containing protein.
      
 0.466
dock8
Dedicator of cytokinesis 8; Belongs to the DOCK family.
   
  
 0.444
grid2
Glutamate receptor, ionotropic, delta 2.
    
 
 0.444
AOPEP
Aminopeptidase O (putative).
     
 0.441
wdr82
WD repeat domain 82.
      
 0.427
H2LRH6_ORYLA
Uncharacterized protein.
    
  0.426
tnn
Tenascin N.
    
  0.426
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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